So after so may digging and with help for people from kde forums I finally got it working correctly.
1. stop akonadi
2. delete ~/.config/akonadi
3. delete ~/.local/share/akonadi/
4. start akonadi ( dont remember if I restarted or not)
5. from konsole run kres-migrator
After this I got my akonadi started but had mysql error logs. For that you need to run
mysql_install_db --datadir=$HOME/.local/share/akonadi/db_data/ when akonadi is stopped.
http://forum.kde.org/viewtopic.php?f=20&t=83092